PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 204aa    MW: 22298.2 Da    PI: 6.9247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-3981091101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dCv+apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l
  XP_011083017.1   8 PCGACKFLRRKCAADCVFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQL 102
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_011083017.1 103 MQVKAQL 109
                     *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8297109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-388106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATGAGSPCG ACKFLRRKCA ADCVFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVP  60
DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLMQVKAQLA QTLMDQSSRN  120
AENLWPGSLG PGPTGPSPFP GSFPDHMNYS NISPQSSLDS VEHHSDGIHQ GMQETDSRDD  180
LLTFQAYSRK RPSQTDLSEL HIYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083017.11e-153PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB74e-66LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A068U6E52e-98A0A068U6E5_COFCA; Uncharacterized protein
STRINGPOPTR_0005s24320.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.19e-55lateral organ boundaries-domain 16